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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142383837_142489662_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
142383837 - 142489662
Intron Length:
105826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTCCC
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
TGTGAATTATTC
Flanking Amino Acid:
WRNVRERRLAEIEAKEACDW
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.4
63.7
38.9
Major BPS
61.3
0.28
1
62
30.6
Major PPT
85.9
0.81
0.6
84.7
23
Minor 5ss
29.5
-2.3
2.9
36.8
40.3
Minor BPS
44.5
-0.4
2
57.26
41.4

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041475
142345381 - 142489786
144406