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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14247877_14249366_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14247877 - 14249366
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCTTTTAAAG
Flanking Amino Acid:
GIDLNCGCPQRWAMAEGYGA
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.1
32.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.1
0.77
0.9
86.1
25.6
Minor 5ss
39.7
-1.2
3.4
55.3
48.9
Minor BPS
65.1
0.33
1.4
69.62
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007933
14229268 - 14253079
23812