About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14249490_14250271_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14249490 - 14250271
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTGTAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCCTTGTAATT
Flanking Amino Acid:
NPGFSVSIKIRIHEDLKRTV
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.2
0.55
0.9
71.2
38.6
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
50.6
0.1
2
71.97
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007933
14229268 - 14253079
23812