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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142511114_142557808_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142511114 - 142557808
Intron Length:
46695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AATAATTTATTT
Flanking Amino Acid:
VSTGARPKTDVLFQKLSKEK
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
83.5
27.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
89.5
0.89
0.7
85.1
29.3
Minor 5ss
38.5
-1.3
2.8
50.4
39.3
Minor BPS
48.4
-0
1.7
65.33
39.2

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025588
142345417 - 142634863
289447