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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142557944_142562463_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142557944 - 142562463
Intron Length:
4520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
AATTCTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCCTTTATTT
Flanking Amino Acid:
TPSTKRHKQLCPVPVEKSFY
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.8
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.6
0.69
0.9
73.5
36.1
Minor 5ss
33.9
-1.8
2.9
39
40
Minor BPS
61.9
0.45
1.6
76.92
40.3

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025588
142345417 - 142634863
289447