Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14257446_14257707_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

5UTR

Intron Coordinates:

14257446 - 14257707

Intron Length:

262

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CCG|GCAGGTTGC

5'SS Class:

major

3'SS Sequence:

AAACTCAAACCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TTTTCTGAAACT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.2

65.7

42.8

Major BPS

82.1

0.8

71.6

36.4

Major PPT

51.6

0.04

1.1

42.6

41.2

Minor 5ss

29.3

-2.4

4.1

43.3

44.5

Minor BPS

59.6

0.38

2.3

87.23

Associated Gene:

Gene:

BCAP29

Ensembl Gene ID:

ENSAPLG00000007986

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031368

14257163 - 14272223

15061