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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14257860_14262002_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14257860 - 14262002
Intron Length:
4143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATTTTGAATA
Flanking Amino Acid:
VLCLPFISPLRWQKIFMIPL
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
82
0.72
0.9
75.7
37.9
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
64.6
0.46
1.3
72.42
33.4

Associated Gene:

Gene:
BCAP29
Ensembl Gene ID:
ENSAPLG00000007986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039926
14257708 - 14289952
32245
ENSAPLT00000031368
14257163 - 14272223
15061
ENSAPLT00000030664
14257708 - 14290795
33088
ENSAPLT00000008301
14257708 - 14292784
35077