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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14262104_14263761_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14262104 - 14263761
Intron Length:
1658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TTTTTGTTTACA
Flanking Amino Acid:
IIVLLIILFLDAFREVRKYS
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
57.3
0.22
2.3
78.67
37.8

Associated Gene:

Gene:
BCAP29
Ensembl Gene ID:
ENSAPLG00000007986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031368
14257163 - 14272223
15061
ENSAPLT00000030664
14257708 - 14290795
33088
ENSAPLT00000008301
14257708 - 14292784
35077
ENSAPLT00000039926
14257708 - 14289952
32245