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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142632903_142634354_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
142632903 - 142634354
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTTCT
5'SS Class:
major
3'SS Sequence:
ATTATCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ACTGCATTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
70.2
36.5
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
82.9
0.74
0.9
74
40.9
Minor 5ss
36.1
-1.6
3.2
46.6
44.1
Minor BPS
51
0.11
2
71.32
45.4

Associated Gene:

Gene:
STARD13
Ensembl Gene ID:
ENSAPLG00000009841
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025588
142345417 - 142634863
289447