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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14263913_14269136_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14263913 - 14269136
Intron Length:
5224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GTTTCCTCACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
GTTTCCTCACCA
Flanking Amino Acid:
YISGFSLFLWLVLRRTITLL
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1.1
80.4
34
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
74.6
0.55
0.9
67.4
39
Minor 5ss
42.2
-0.9
2.9
61.3
43
Minor BPS
63.3
0.41
1.9
76.68
40.2

Associated Gene:

Gene:
BCAP29
Ensembl Gene ID:
ENSAPLG00000007986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039926
14257708 - 14289952
32245
ENSAPLT00000031368
14257163 - 14272223
15061
ENSAPLT00000030664
14257708 - 14290795
33088
ENSAPLT00000008301
14257708 - 14292784
35077