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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142671416_142672063_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
142671416 - 142672063
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAAAAA
5'SS Class:
major
3'SS Sequence:
ACTTTCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TCTTTCTGAAAT
Flanking Amino Acid:
KLRIEHQSITAPSKKKIEIS
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.6
34.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.6
0.55
0.9
69.2
35.4
Minor 5ss
32.6
-2
3
40.7
45.3
Minor BPS
66.8
0.6
1.5
81.8
39.4

Associated Gene:

Gene:
RFC3
Ensembl Gene ID:
ENSAPLG00000010374
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041906
142667073 - 142679969
12897
ENSAPLT00000019250
142667073 - 142680052
12980
ENSAPLT00000010823
142670675 - 142680052
9378