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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142672132_142674937_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142672132 - 142674937
Intron Length:
2806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCTATTTAATC
Flanking Amino Acid:
ASNYHLEVNPSDAGNNDRVV
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.4
0.53
0.9
69.6
35.8
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
68.7
0.57
1.4
74.77
36.3

Associated Gene:

Gene:
RFC3
Ensembl Gene ID:
ENSAPLG00000010374
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041906
142667073 - 142679969
12897
ENSAPLT00000019250
142667073 - 142680052
12980
ENSAPLT00000010823
142670675 - 142680052
9378