Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142675861_142676102_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

142675861 - 142676102

Intron Length:

242

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTACGTTGA

5'SS Class:

major

3'SS Sequence:

GTTTCCCATCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

GTTTGCTGAATG

Flanking Amino Acid:

IRVPAPSIEDICNVLSSVCK

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.9

0.56

1.1

68.2

39.6

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

71.8

0.49

0.9

63.6

38.4

Minor 5ss

40.9

-1

3.1

52.9

44.5

Minor BPS

55.5

0.04

65.07

42.9

Associated Gene:

Gene:

RFC3

Ensembl Gene ID:

ENSAPLG00000010374

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041906

142667073 - 142679969

12897

ENSAPLT00000019250

142667073 - 142680052

12980

ENSAPLT00000010823

142670675 - 142680052

9378