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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142676240_142676348_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
142676240 - 142676348
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
CATCATTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTTGCTTTATCA
Flanking Amino Acid:
LLMCESCRVQQYPFTADQDI
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
67.9
0.4
0.9
62.4
38.2
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
67.1
0.53
1.7
78.76
38.3

Associated Gene:

Gene:
RFC3
Ensembl Gene ID:
ENSAPLG00000010374
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019250
142667073 - 142680052
12980
ENSAPLT00000010823
142670675 - 142680052
9378
ENSAPLT00000041906
142667073 - 142679969
12897