Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142678147_142679777_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

142678147 - 142679777

Intron Length:

1631

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTTCAG

5'SS Class:

major

3'SS Sequence:

GTCTTGCTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TTTTTTTGAATA

Flanking Amino Acid:

HCIPPEIIMKGLLSELLNNC

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.6

0.56

1.1

61.8

44.3

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

76.3

0.59

0.9

73.5

37.1

Minor 5ss

32.6

-2

41.1

45.2

Minor BPS

70.5

0.64

1.3

79.42

30.4

Associated Gene:

Gene:

RFC3

Ensembl Gene ID:

ENSAPLG00000010374

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041906

142667073 - 142679969

12897

ENSAPLT00000019250

142667073 - 142680052

12980

ENSAPLT00000010823

142670675 - 142680052

9378