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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14269273_14271938_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14269273 - 14271938
Intron Length:
2666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATCTTCT
5'SS Class:
weak_major
3'SS Sequence:
TGGTTTTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGGTTTTTAATA
Flanking Amino Acid:
YLAENERLQEALNERGSSGN
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
74.1
37.2
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
73
0.52
1
69.9
40.3
Minor 5ss
65.7
0.53
1.9
77.2
37.8
Minor BPS
69.6
0.61
1.2
71.02
35.8

Associated Gene:

Gene:
BCAP29
Ensembl Gene ID:
ENSAPLG00000007986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039926
14257708 - 14289952
32245
ENSAPLT00000031368
14257163 - 14272223
15061
ENSAPLT00000030664
14257708 - 14290795
33088
ENSAPLT00000008301
14257708 - 14292784
35077