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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142696588_142700679_R

Intron Information:

Intron Rank:
131827
Intron Class:
major
Intron Phase:
Intron Coordinates:
142696588 - 142700679
Intron Length:
4092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TGTACCCAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
47.3
-0.3
2.1
57.73
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018140
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038471
142696348 - 142700980
4633
ENSAPLT00000027861
142696348 - 142702949
6602
ENSAPLT00000026305
142696348 - 142702996
6649