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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142700816_142702909_R

Intron Information:

Intron Rank:
131828
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
142700816 - 142702909
Intron Length:
2094

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TGGATATATAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TTTTACTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
54.4
0.1
1.2
53.2
44.5
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
72
0.69
1.7
85.21
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018140
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026305
142696348 - 142702996
6649