About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14272051_14280007_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14272051 - 14280007
Intron Length:
7957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TGATATTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATTAAAA
Flanking Amino Acid:
LRAELQKTSNALVKANNEVI
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
80
0.75
1
78.6
31
Major PPT
79.3
0.66
0.9
72.6
41.9
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
51.9
0.06
1.9
65.89
39.1

Associated Gene:

Gene:
BCAP29
Ensembl Gene ID:
ENSAPLG00000007986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039926
14257708 - 14289952
32245
ENSAPLT00000030664
14257708 - 14290795
33088
ENSAPLT00000008301
14257708 - 14292784
35077