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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14280109_14281451_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14280109 - 14281451
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAATTTTTAATC
Flanking Amino Acid:
RLMREHERLQESSSEAEDKK
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.2
0.81
0.8
83.9
31.1
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
70.8
0.63
1.1
71.7
33.3

Associated Gene:

Gene:
BCAP29
Ensembl Gene ID:
ENSAPLG00000007986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039926
14257708 - 14289952
32245
ENSAPLT00000030664
14257708 - 14290795
33088
ENSAPLT00000008301
14257708 - 14292784
35077