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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14281487_14290655_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14281487 - 14290655
Intron Length:
9169

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TGTTTTCTCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATGTTCATAACT
Flanking Amino Acid:
SSSEAEDKKDLCSKKRAFQI
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
69.5
41.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
85.3
0.79
0.8
80.9
31.1
Minor 5ss
39.2
-1.2
3.4
59.1
45.3
Minor BPS
68.2
0.65
1.6
83.04
37.9

Associated Gene:

Gene:
BCAP29
Ensembl Gene ID:
ENSAPLG00000007986
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008301
14257708 - 14292784
35077