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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142902112_142903892_F

Intron Information:

Intron Rank:
134768
Intron Class:
major
Intron Phase:
Intron Coordinates:
142902112 - 142903892
Intron Length:
1781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TCTTTTATCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GCTCTTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
55
44.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.8
0.72
0.7
81.7
28.7
Minor 5ss
49.5
-0
2.5
61.3
45.5
Minor BPS
54.8
0.23
1.6
69.28
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022482
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035976
142902002 - 142906512
4511