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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142902112_142904602_F

Intron Information:

Intron Rank:
134766
Intron Class:
major
Intron Phase:
Intron Coordinates:
142902112 - 142904602
Intron Length:
2491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TGGGCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTTCTTACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
55
44.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
73
0.52
1
65.7
40.9
Minor 5ss
49.5
-0
2.5
61.3
45.5
Minor BPS
63.8
0.51
1.7
80.39
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022482
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035339
142902002 - 142913534
11533