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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142904749_142913353_F

Intron Information:

Intron Rank:
134763
Intron Class:
major
Intron Phase:
Intron Coordinates:
142904749 - 142913353
Intron Length:
8605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCTGT
5'SS Class:
major
3'SS Sequence:
TTCCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.5
40.3
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
85.2
0.79
0.7
80.4
24.9
Minor 5ss
40.3
-1.1
3.1
52.7
46.4
Minor BPS
64
0.52
1.7
84.31
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022482
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022807
142902900 - 142913534
10635
ENSAPLT00000040955
142779688 - 142913534
133847
ENSAPLT00000035339
142902002 - 142913534
11533
ENSAPLT00000033746
142866971 - 142913534
46564