Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14293990_14294368_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

14293990 - 14294368

Intron Length:

379

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAATAAT

5'SS Class:

major

3'SS Sequence:

TTTGTCATTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTGTCATTACAG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

83.1

28.3

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

83.8

0.76

0.8

77.5

35.6

Minor 5ss

38.5

-1.3

39.8

Minor BPS

49.5

-0.1

2.1

61.84

45.5

Associated Gene:

Gene:

SLC26A4

Ensembl Gene ID:

ENSAPLG00000008089

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017724

14293590 - 14307651

14062