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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_142943508_142945108_R

Intron Information:

Intron Rank:
131564
Intron Class:
major
Intron Phase:
Intron Coordinates:
142943508 - 142945108
Intron Length:
1601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTTTTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88
0.85
0.7
83.5
31.6
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
65.1
0.45
1.6
73.08
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017989
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045852
142940907 - 142945320
4414