Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14306171_14307472_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

14306171 - 14307472

Intron Length:

1302

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTCTT

5'SS Class:

strong_major

3'SS Sequence:

ATCTGCACATTAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

TATTCCATATAT

Flanking Amino Acid:

IKKGKLKATKNGIISEPGIT

Intron Amino Acid Position:

458

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

83.7

34.8

Major BPS

75.9

0.64

66.1

40.5

Major PPT

59.8

0.22

57.4

37.9

Minor 5ss

40.2

-1.1

3.1

59.2

45.2

Minor BPS

56.4

0.28

80.02

41.1

Associated Gene:

Gene:

SLC26A4

Ensembl Gene ID:

ENSAPLG00000008089

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017724

14293590 - 14307651

14062

ENSAPLT00000008424

14290753 - 14307651

16899