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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14327574_14327949_R

Intron Information:

Intron Rank:
131492
Intron Class:
major
Intron Phase:
Intron Coordinates:
14327574 - 14327949
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACACTA
5'SS Class:
major
3'SS Sequence:
GTGTTCATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCCTGACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
71.7
40.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.1
0.61
0.9
70.5
39.9
Minor 5ss
41.1
-1
3.2
56.8
47.3
Minor BPS
65.8
0.48
1.7
77.95
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017963
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023507
14325319 - 14329133
3815