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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143471631_143477411_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143471631 - 143477411
Intron Length:
5781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTA
5'SS Class:
strong_major
3'SS Sequence:
ATATATTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CATTCTTTAAAT
Flanking Amino Acid:
VGTSYGLPQARRISLATPRQ
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
86
25
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
70.5
0.46
0.9
62.7
43.2
Minor 5ss
43.8
-0.7
2.8
58.6
45.8
Minor BPS
73.3
0.81
1.3
82.33
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018948
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042802
143471491 - 143504217
32727