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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143477528_143485975_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143477528 - 143485975
Intron Length:
8448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTAATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TCTTTCTTAATA
Flanking Amino Acid:
EYLMFLNTIAGRTYNDLNQY
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
80
0.67
0.8
77.5
29.8
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
81.3
0.98
1
82.43
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018948
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042802
143471491 - 143504217
32727