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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143486089_143495571_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143486089 - 143495571
Intron Length:
9483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGTTC
5'SS Class:
major
3'SS Sequence:
CATCCCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGATATTTGACC
Flanking Amino Acid:
LPGNFRDLSKPIGALNPKRA
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
68.4
37.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.4
0.66
0.8
72.8
31.5
Minor 5ss
47.4
-0.2
3
67.5
43.9
Minor BPS
60.7
0.32
1.5
68.28
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018948
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042802
143471491 - 143504217
32727