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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143545626_143546464_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143545626 - 143546464
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACCCTA
5'SS Class:
major
3'SS Sequence:
GCATTCTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
AAAACCTGAATT
Flanking Amino Acid:
KSFRVYSTETGKLTQIVFGH
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.2
65
42.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.2
0.39
1
59.4
41.5
Minor 5ss
41.5
-0.9
3.1
56.1
48
Minor BPS
60
0.39
1.5
70.93
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010039
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010452
143545412 - 143564188
18777