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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143557590_143561205_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143557590 - 143561205
Intron Length:
3616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAAT
5'SS Class:
major
3'SS Sequence:
TTTTCATATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATGTTTTCATA
Flanking Amino Acid:
ELGLVISGAKEGPCLVHTIT
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.2
80.7
33.7
Major BPS
100
1.24
0.5
100
0
Major PPT
83
0.74
0.9
78.4
34
Minor 5ss
30.6
-2.2
2.9
40.4
45.3
Minor BPS
49.4
-0
1.8
63.03
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010039
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010452
143545412 - 143564188
18777