About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143562273_143564097_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
143562273 - 143564097
Intron Length:
1825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTATCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAC
U12 Branch Point Sequence:
TCTTTCCTATCT
Flanking Amino Acid:
IRAMDLSHDQRTLITGMASG
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
61.1
0.28
1.1
69.4
35.9
Major PPT
86.2
0.81
0.8
84.3
30.3
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
57.9
0.33
2
80
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010039
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010452
143545412 - 143564188
18777