About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143587065_143588516_R

Intron Information:

Intron Rank:
148035
Intron Class:
major
Intron Phase:
Intron Coordinates:
143587065 - 143588516
Intron Length:
1452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAG
U12 Branch Point Sequence:
TCCTTTCTAGGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
85.3
32.2
Major BPS
49.9
-0
1.7
58.5
47.9
Major PPT
83.9
0.76
0.7
75.7
32.7
Minor 5ss
39.9
-1.1
2.8
46.6
41.8
Minor BPS
42.9
-0.4
2
59.08
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026946
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030723
143580689 - 143588736
8048