Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143650008_143657409_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143650008 - 143657409

Intron Length:

7402

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAC|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAA

U12 Branch Point Sequence:

TCTCTCTGAAGT

Flanking Amino Acid:

LQVLEHPWVNDDGLPENEHQ

Intron Amino Acid Position:

649

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

1.2

90.9

28.7

Major BPS

69.8

0.49

37.5

Major PPT

86.6

0.82

0.7

81.5

30.6

Minor 5ss

-0.8

2.9

59.7

Minor BPS

55.3

0.24

1.8

73.74

43.1

Associated Gene:

Gene:

DCLK1

Ensembl Gene ID:

ENSAPLG00000009916

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010329

143634500 - 143868192

233693

ENSAPLT00000033771

143634030 - 143868192

234163

ENSAPLT00000028232

143634030 - 143868192

234163

ENSAPLT00000018643

143634500 - 143697502

63003