Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143660604_143661298_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143660604 - 143661298

Intron Length:

695

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAATCAC

5'SS Class:

major

3'SS Sequence:

CTCTCACTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAATCAT

U12 Branch Point Sequence:

ATTTCTCTAATC

Flanking Amino Acid:

YVAPEIIAETGYGLKVDIWA

Intron Amino Acid Position:

563

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

65.6

40.5

Major BPS

80.4

0.76

80.3

31.8

Major PPT

74.8

0.56

0.8

66.2

34.7

Minor 5ss

33.4

-1.9

35.7

41.1

Minor BPS

67.4

0.52

1.6

77.37

32.1

Associated Gene:

Gene:

DCLK1

Ensembl Gene ID:

ENSAPLG00000009916

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028232

143634030 - 143868192

234163

ENSAPLT00000018643

143634500 - 143697502

63003

ENSAPLT00000010329

143634500 - 143868192

233693

ENSAPLT00000033771

143634030 - 143868192

234163