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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143661433_143665613_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143661433 - 143665613
Intron Length:
4181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTGATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTTGATT
Flanking Amino Acid:
HRDIKPENLLVYEHQDGSKS
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.2
0.5
1
70.7
39.6
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
77.1
0.93
1
87.14
32.1

Associated Gene:

Gene:
DCLK1
Ensembl Gene ID:
ENSAPLG00000009916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018643
143634500 - 143697502
63003
ENSAPLT00000010329
143634500 - 143868192
233693
ENSAPLT00000033771
143634030 - 143868192
234163
ENSAPLT00000028232
143634030 - 143868192
234163