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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143678380_143679723_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143678380 - 143679723
Intron Length:
1344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTTC
5'SS Class:
major
3'SS Sequence:
ATGATTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CCTTCACTAACA
Flanking Amino Acid:
SMDENDGPAEEVLEEGFQVP
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1.1
73.9
38
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
77.8
0.63
0.9
74.2
40.8
Minor 5ss
46.8
-0.3
3.2
67.4
44
Minor BPS
55.2
0.16
2
69.21
42.9

Associated Gene:

Gene:
DCLK1
Ensembl Gene ID:
ENSAPLG00000009916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028232
143634030 - 143868192
234163
ENSAPLT00000018643
143634500 - 143697502
63003
ENSAPLT00000010329
143634500 - 143868192
233693
ENSAPLT00000033771
143634030 - 143868192
234163