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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14367981_14371241_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
14367981 - 14371241
Intron Length:
3261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGGCGGTG
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TGTTCTTCACCT
Flanking Amino Acid:
PRGRGRAGSTTVCVEKNETL
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.6
0.06
1.2
46.1
44.1
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
89.8
0.9
0.6
89.3
19.6
Minor 5ss
32
-2.1
3.9
45.5
49.6
Minor BPS
60.6
0.41
1.8
80.88
40.9

Associated Gene:

Gene:
DLD
Ensembl Gene ID:
ENSAPLG00000009964
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010418
14367909 - 14379816
11908