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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143696573_143697483_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143696573 - 143697483
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTTTCAATT
Flanking Amino Acid:
MLELIEVNGTPGSQLS
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.4
0.62
0.8
74.3
36.5
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
66.9
0.61
1.4
81.89
33.7

Associated Gene:

Gene:
DCLK1
Ensembl Gene ID:
ENSAPLG00000009916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018643
143634500 - 143697502
63003