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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143708449_143746994_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
143708449 - 143746994
Intron Length:
38546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TAATTGCTAACT
Flanking Amino Acid:
YQDDFLLDESECRVVKSTSY
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
76.6
33.6
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
87.2
0.84
0.7
84.6
30.3
Minor 5ss
31.7
-2.1
3.1
36.4
42
Minor BPS
49.4
0.03
2.3
74.55
41.8

Associated Gene:

Gene:
DCLK1
Ensembl Gene ID:
ENSAPLG00000009916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033771
143634030 - 143868192
234163
ENSAPLT00000028232
143634030 - 143868192
234163
ENSAPLT00000010329
143634500 - 143868192
233693
ENSAPLT00000044267
143689294 - 143868192
178899