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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14373847_14374186_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14373847 - 14374186
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTGATTATCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAAATCTTAATT
Flanking Amino Acid:
GIAHLFKQNKVTHVSGFGKI
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1.1
79.9
36
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
60
0.23
1.1
59.7
39.6
Minor 5ss
40.2
-1.1
2.7
50
46.3
Minor BPS
70.5
0.72
1.2
78.67
37.2

Associated Gene:

Gene:
DLD
Ensembl Gene ID:
ENSAPLG00000009964
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010418
14367909 - 14379816
11908