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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143747095_143856920_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
143747095 - 143856920
Intron Length:
109826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATACAA
Flanking Amino Acid:
KRLYTLDGKQVMCLQDFFGD
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
49
-0
1.9
66.55
39.4

Associated Gene:

Gene:
DCLK1
Ensembl Gene ID:
ENSAPLG00000009916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044267
143689294 - 143868192
178899
ENSAPLT00000033771
143634030 - 143868192
234163
ENSAPLT00000028232
143634030 - 143868192
234163
ENSAPLT00000010329
143634500 - 143868192
233693