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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14375872_14377261_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14375872 - 14377261
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTTCCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TGTTTTCCCATA
Flanking Amino Acid:
TKKPDGKIDVAVEAAAGGKA
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.3
81.8
38.5
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
78
0.63
0.8
73.5
31.7
Minor 5ss
42.6
-0.8
2.9
56
41.5
Minor BPS
41.5
-0.6
2
56.17
37.5

Associated Gene:

Gene:
DLD
Ensembl Gene ID:
ENSAPLG00000009964
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010418
14367909 - 14379816
11908