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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14378010_14378406_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14378010 - 14378406
Intron Length:
397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGCTT
5'SS Class:
major
3'SS Sequence:
ATCTGTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
AGGTCATTAACT
Flanking Amino Acid:
GKSEEQLKEEGVEYKIGKFP
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
66.9
44.1
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
78.4
0.64
0.8
73.3
36.5
Minor 5ss
35
-1.7
3.8
55.9
48.3
Minor BPS
69.6
0.69
1.6
80.85
40.3

Associated Gene:

Gene:
DLD
Ensembl Gene ID:
ENSAPLG00000009964
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010418
14367909 - 14379816
11908