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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14379647_14379750_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14379647 - 14379750
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
CTGTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTATTT
Flanking Amino Acid:
DVARVCHAHPTVSEAFREAN
Intron Amino Acid Position:
447

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
82.5
0.73
0.8
77.2
31.6
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
51.3
0.12
2
75.69
40.7

Associated Gene:

Gene:
DLD
Ensembl Gene ID:
ENSAPLG00000009964
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010418
14367909 - 14379816
11908