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Intron Name: Anas_platyrhynchos_platyrhynchos_1_143857268_143867803_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

143857268 - 143867803

Intron Length:

10536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTTTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAC

U12 Branch Point Sequence:

TGCTCTTGCACT

Flanking Amino Acid:

KISSLDQLVEGESYVCGSIE

Intron Amino Acid Position:

126

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.9

81.8

38.5

Major BPS

72.6

0.56

0.9

63.1

35.8

Major PPT

85.6

0.8

80.7

31.4

Minor 5ss

41.1

-1

2.9

57.9

46.4

Minor BPS

52.9

0.17

1.9

73.22

43.7

Associated Gene:

Gene:

DCLK1

Ensembl Gene ID:

ENSAPLG00000009916

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033771

143634030 - 143868192

234163

ENSAPLT00000028232

143634030 - 143868192

234163

ENSAPLT00000010329

143634500 - 143868192

233693

ENSAPLT00000044267

143689294 - 143868192

178899