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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143867935_143868120_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
143867935 - 143868120
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGGCAG
5'SS Class:
major
3'SS Sequence:
CTGACCGGTTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCTCCCCTGACC
Flanking Amino Acid:
EHFDERDKAQRSFEALLADL
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
53.5
44.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
57.7
0.17
1
54.3
41.3
Minor 5ss
36.7
-1.5
3.3
47.3
48.1
Minor BPS
61.6
0.35
1.7
72.51
38.5

Associated Gene:

Gene:
DCLK1
Ensembl Gene ID:
ENSAPLG00000009916
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033771
143634030 - 143868192
234163