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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_143903967_143904524_R

Intron Information:

Intron Rank:
137357
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
143903967 - 143904524
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCACCAGC
5'SS Class:
weak_major
3'SS Sequence:
CCGTTATCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAC
U12 Branch Point Sequence:
TTGTTCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.5
0.25
1.5
58
47.1
Major BPS
73.7
0.59
0.9
63.6
35.1
Major PPT
75.9
0.58
0.9
69.5
35.7
Minor 5ss
40.7
-1
2.7
53.1
43.7
Minor BPS
81
1.06
1
90.53
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021397
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029436
143902339 - 143905542
3204